BSc thesis “modeling species distribution in Kenya” finalised

BSc thesis “modeling species distribution in Kenya” finalised

October 20, 2014

Annika Rudolph a BSc student handed in her BSc thesis on species distribution modeling in Kenya using remote sensing data and the randomForest model. It is impressive what she achieved within 8 weeks without any prior R knowledge. All remote sensing data as well as statistical modeling were done in R, a lot of effort has also been put into the acquisition of relevant remote sensing imagery BSc_Rudolph_workflow.

 

In the passed decades global environmental changes such as climate and land-use changes and anthropogenic pressure increased. As a result the world’s biological diversity faces exceptional threat with following increasing rate of biodiversity loss. It becomes important to assess and
monitor actual or potential geographic distribution of species to prevent this ongoing loss. This has become an important component of conservation planning in recent years. A wide variety of modeling techniques have been developed for this purpose, such as remote sensing methods. These models ordinarily utilize associations between environmental variables and known species occurrence records to identify environmental conditions within which populations can be maintained. The spatial distribution of environments that are suitable for the species can then be estimated across a study region. In this study species distribution is estimated in Kenya using environmental variables derived
from remotely sensed data such as Moderate Resolution Imaging Spectroradiometer (MODIS). The focus of this work lies on the comparison between two approaches in terms of their appropriateness for predicting species distribution within the study area. The first approach
analyzes the species probability from statistics of all summed up species. The second approach examines species probability for each species and sums up statistics afterward. The results provide an overview of the predicted species probability in regard to their vicinity to Protected Areas.
For each approach the Pearson’s coefficient of correlation between observations and predictions (r2) and Receiver Operating Characteristics (ROC) is calculated. The results of the Random Forest algorithm reach a r2 of 0.49 for the first approach and 0.11 for the second approach. ROC is 0.88 for the first approach and 0.67 for the second approach. These results exhibit reasonable significance. This study showed that the predicted probability of species distribution is close to the actual probability for the first approach. The second approach is far from the actual probability.

you may also like:

Our research site and project covered by BR

Our research site and project covered by BR

The University forest at Sailershausen is a unique forest owned by the University of Wuerzburg. It comes with a high diversity of trees and most important is part of various research projects. We conducted various UAS/UAV/drone flights with Lidar, multispectral and...

Meeting of the FluBig Project Team

Meeting of the FluBig Project Team

During the last two days, the team of the FluBig project (remote-sensing.org/new-dfg-project-on-fluvial-research/) met at the EORC for discussing the ongoing work on fluvial biogeomorphology. After returning from a successful field expedition to Kyrgyzstan a couple of...

‘Super Test Site Würzburg’ project meeting

‘Super Test Site Würzburg’ project meeting

After the successful "Super Test Site Würzburg" measurement campaign in June (please see here: https://remote-sensing.org/super-test-site-wurzburg-from-the-idea-to-realization/ ), the core team from the University of Würzburg, the Karlsruhe Institute of Technology,...

EORC Talk: Geolingual Studies: A New Research Direction

EORC Talk: Geolingual Studies: A New Research Direction

On July 19th, Lisa Lehnen and Richard Lemoine Rodríguez, two postdoctoral researchers of the Geolingual Studies project, gave an inspiring presentation at the EORC talk series.   In the talk titled "Geolingual Studies – a new research direction", they...

EO support for UrbanPArt field work

EO support for UrbanPArt field work

From May to September, Karla Wenner, a PhD student at the Juniorprofessorship for Applied Biodiversity Science, will be sampling urban green spaces and semi-natural grasslands in Würzburg as part of the UrbanPArt project. Our cargo bikes support the research project...

Cinematic drone shots

Cinematic drone shots

We spend quite some time in the field conducting field work, from lidar measurements to vegetation samples in order to correlate it with remote sensing data to answer various research questions concerning global change. Field work is always a 24/7 work load and...